kgx
update-docs
Installation
Installation for users
Installation for developers
Documentation
Transformers
Transformer
NeoTransformer
PandasTransformer
JsonTransformer
LogicTermTransformer
NxTransformer
RdfGraphMixin
RdfTransformer
SparqlTransformer
Operations
Clique Merge
Utilities
graph_utils
kgx_utils
model_utils
rdf_utils
KGX CLI
edge-summary
load-and-merge
neo4j-download
neo4j-edge-summary
neo4j-node-summary
neo4j-upload
node-summary
transform
validate
Examples
KGX CLI usage
kgx
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V
Symbols
--address <address>
KGX-CLI-neo4j-download command line option
KGX-CLI-neo4j-edge-summary command line option
KGX-CLI-neo4j-node-summary command line option
KGX-CLI-neo4j-upload command line option
--debug
KGX-CLI command line option
--directed <directed>
KGX-CLI-neo4j-download command line option
--edge-label <edge_label>
KGX-CLI-neo4j-download command line option
--input-type <input_type>
KGX-CLI-edge-summary command line option
KGX-CLI-neo4j-upload command line option
KGX-CLI-node-summary command line option
KGX-CLI-transform command line option
--mapping <mapping>
KGX-CLI-transform command line option
--max-rows <max_rows>
KGX-CLI-node-summary command line option
--max_rows <max_rows>
KGX-CLI-edge-summary command line option
--object-label <object_label>
KGX-CLI-neo4j-download command line option
--output <output>
KGX-CLI-edge-summary command line option
KGX-CLI-neo4j-download command line option
KGX-CLI-neo4j-edge-summary command line option
KGX-CLI-neo4j-node-summary command line option
KGX-CLI-node-summary command line option
KGX-CLI-transform command line option
KGX-CLI-validate command line option
--output-dir <output_dir>
KGX-CLI-validate command line option
--output-type <output_type>
KGX-CLI-neo4j-download command line option
KGX-CLI-transform command line option
--page-size <page_size>
KGX-CLI-neo4j-download command line option
--password <password>
KGX-CLI-neo4j-download command line option
KGX-CLI-neo4j-edge-summary command line option
KGX-CLI-neo4j-node-summary command line option
KGX-CLI-neo4j-upload command line option
--preserve
KGX-CLI-transform command line option
--stop-after <stop_after>
KGX-CLI-neo4j-download command line option
--subject-label <subject_label>
KGX-CLI-neo4j-download command line option
--use-unwind
KGX-CLI-neo4j-upload command line option
--username <username>
KGX-CLI-neo4j-download command line option
KGX-CLI-neo4j-edge-summary command line option
KGX-CLI-neo4j-node-summary command line option
KGX-CLI-neo4j-upload command line option
--version
KGX-CLI command line option
-a
KGX-CLI-neo4j-download command line option
KGX-CLI-neo4j-edge-summary command line option
KGX-CLI-neo4j-node-summary command line option
KGX-CLI-neo4j-upload command line option
-d
KGX-CLI-validate command line option
-m
KGX-CLI-edge-summary command line option
KGX-CLI-node-summary command line option
-o
KGX-CLI-edge-summary command line option
KGX-CLI-neo4j-download command line option
KGX-CLI-neo4j-edge-summary command line option
KGX-CLI-neo4j-node-summary command line option
KGX-CLI-node-summary command line option
KGX-CLI-transform command line option
KGX-CLI-validate command line option
-p
KGX-CLI-neo4j-download command line option
KGX-CLI-neo4j-edge-summary command line option
KGX-CLI-neo4j-node-summary command line option
KGX-CLI-neo4j-upload command line option
-u
KGX-CLI-neo4j-download command line option
KGX-CLI-neo4j-edge-summary command line option
KGX-CLI-neo4j-node-summary command line option
KGX-CLI-neo4j-upload command line option
_
__init__() (kgx.transformers.neo_transformer.NeoTransformer method)
A
add_edge() (kgx.transformers.rdf_graph_mixin.RdfGraphMixin method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
add_edge_attribute() (kgx.transformers.rdf_graph_mixin.RdfGraphMixin method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
add_node() (kgx.transformers.rdf_graph_mixin.RdfGraphMixin method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
add_node_attribute() (kgx.transformers.rdf_graph_mixin.RdfGraphMixin method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
add_ontology() (kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
B
build_cliques() (kgx.operations.clique_merge.CliqueMerge method)
C
camelcase_to_sentencecase() (in module kgx.utils.kgx_utils)
categorize() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.nx_transformer.GraphMLTransformer method)
(kgx.transformers.nx_transformer.NetworkxTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
(kgx.transformers.transformer.Transformer method)
CliqueMerge (class in kgx.operations.clique_merge)
consolidate_edges() (kgx.operations.clique_merge.CliqueMerge method)
contract() (in module kgx.utils.kgx_utils)
count() (kgx.transformers.neo_transformer.NeoTransformer method)
create_constraints() (kgx.transformers.neo_transformer.NeoTransformer method)
curie_lookup() (in module kgx.utils.graph_utils)
D
dump() (kgx.transformers.json_transformer.JsonTransformer static method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer static method)
(kgx.transformers.neo_transformer.NeoTransformer static method)
(kgx.transformers.nx_transformer.GraphMLTransformer static method)
(kgx.transformers.nx_transformer.NetworkxTransformer static method)
(kgx.transformers.pandas_transformer.PandasTransformer static method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer static method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer static method)
(kgx.transformers.rdf_transformer.RdfTransformer static method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer static method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer static method)
(kgx.transformers.sparql_transformer.SparqlTransformer static method)
(kgx.transformers.transformer.Transformer static method)
dump_to_file() (kgx.transformers.json_transformer.JsonTransformer static method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer static method)
(kgx.transformers.neo_transformer.NeoTransformer static method)
(kgx.transformers.nx_transformer.GraphMLTransformer static method)
(kgx.transformers.nx_transformer.NetworkxTransformer static method)
(kgx.transformers.pandas_transformer.PandasTransformer static method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer static method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer static method)
(kgx.transformers.rdf_transformer.RdfTransformer static method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer static method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer static method)
(kgx.transformers.sparql_transformer.SparqlTransformer static method)
(kgx.transformers.transformer.Transformer static method)
E
elect_leader() (kgx.operations.clique_merge.CliqueMerge method)
export() (kgx.transformers.json_transformer.JsonTransformer method)
export_edges() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
export_nodes() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
F
FILEPATH
KGX-CLI-edge-summary command line option
KGX-CLI-node-summary command line option
G
generate_edge_key() (in module kgx.utils.kgx_utils)
generate_unwind_edge_query() (kgx.transformers.neo_transformer.NeoTransformer method)
generate_unwind_node_query() (kgx.transformers.neo_transformer.NeoTransformer method)
get_ancestors() (in module kgx.utils.graph_utils)
get_biolink_mapping() (in module kgx.utils.kgx_utils)
get_cache() (in module kgx.utils.kgx_utils)
get_category_from_equivalence() (kgx.operations.clique_merge.CliqueMerge method)
get_category_via_superclass() (in module kgx.utils.graph_utils)
get_curie_lookup_service() (in module kgx.utils.kgx_utils)
get_edges() (kgx.transformers.neo_transformer.NeoTransformer method)
get_filter() (kgx.transformers.neo_transformer.NeoTransformer method)
get_filters() (kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
get_leader_by_annotation() (kgx.operations.clique_merge.CliqueMerge method)
get_leader_by_prefix_priority() (kgx.operations.clique_merge.CliqueMerge method)
get_leader_by_sort() (kgx.operations.clique_merge.CliqueMerge method)
get_nodes() (kgx.transformers.neo_transformer.NeoTransformer method)
get_pages() (kgx.transformers.neo_transformer.NeoTransformer method)
get_parents() (in module kgx.utils.graph_utils)
get_the_most_specific_category() (kgx.operations.clique_merge.CliqueMerge method)
get_toolkit() (in module kgx.utils.kgx_utils)
GraphMLTransformer (class in kgx.transformers.nx_transformer)
I
infer_category() (in module kgx.utils.rdf_utils)
INPUTS
KGX-CLI-neo4j-upload command line option
KGX-CLI-transform command line option
is_empty() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.nx_transformer.GraphMLTransformer method)
(kgx.transformers.nx_transformer.NetworkxTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
(kgx.transformers.transformer.Transformer method)
J
JsonTransformer (class in kgx.transformers.json_transformer)
K
KGX-CLI command line option
--debug
--version
KGX-CLI-edge-summary command line option
--input-type <input_type>
--max_rows <max_rows>
--output <output>
-m
-o
FILEPATH
KGX-CLI-load-and-merge command line option
LOAD_CONFIG
KGX-CLI-neo4j-download command line option
--address <address>
--directed <directed>
--edge-label <edge_label>
--object-label <object_label>
--output <output>
--output-type <output_type>
--page-size <page_size>
--password <password>
--stop-after <stop_after>
--subject-label <subject_label>
--username <username>
-a
-o
-p
-u
KGX-CLI-neo4j-edge-summary command line option
--address <address>
--output <output>
--password <password>
--username <username>
-a
-o
-p
-u
KGX-CLI-neo4j-node-summary command line option
--address <address>
--output <output>
--password <password>
--username <username>
-a
-o
-p
-u
KGX-CLI-neo4j-upload command line option
--address <address>
--input-type <input_type>
--password <password>
--use-unwind
--username <username>
-a
-p
-u
INPUTS
KGX-CLI-node-summary command line option
--input-type <input_type>
--max-rows <max_rows>
--output <output>
-m
-o
FILEPATH
KGX-CLI-transform command line option
--input-type <input_type>
--mapping <mapping>
--output <output>
--output-type <output_type>
--preserve
-o
INPUTS
KGX-CLI-validate command line option
--output <output>
--output-dir <output_dir>
-d
-o
PATH
kgx.operations.clique_merge (module)
kgx.transformers.json_transformer (module)
kgx.transformers.logicterm_transformer (module)
kgx.transformers.neo_transformer (module)
kgx.transformers.nx_transformer (module)
kgx.transformers.pandas_transformer (module)
kgx.transformers.rdf_graph_mixin (module)
kgx.transformers.rdf_transformer (module)
kgx.transformers.sparql_transformer (module)
kgx.transformers.transformer (module)
kgx.utils.graph_utils (module)
kgx.utils.kgx_utils (module)
kgx.utils.model_utils (module)
kgx.utils.rdf_utils (module)
L
load() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
LOAD_CONFIG
KGX-CLI-load-and-merge command line option
load_edge() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
load_edges() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
load_networkx_graph() (kgx.transformers.rdf_graph_mixin.RdfGraphMixin method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
load_node() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
load_node_attributes() (kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
load_nodes() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
LogicTermTransformer (class in kgx.transformers.logicterm_transformer)
M
make_curie() (in module kgx.utils.kgx_utils)
make_valid_types() (in module kgx.utils.model_utils)
merge_graphs() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.nx_transformer.GraphMLTransformer method)
(kgx.transformers.nx_transformer.NetworkxTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
(kgx.transformers.transformer.Transformer method)
MonarchSparqlTransformer (class in kgx.transformers.sparql_transformer)
N
neo4j_report() (kgx.transformers.neo_transformer.NeoTransformer method)
NeoTransformer (class in kgx.transformers.neo_transformer)
NetworkxTransformer (class in kgx.transformers.nx_transformer)
O
ObanRdfTransformer (class in kgx.transformers.rdf_transformer)
P
PandasTransformer (class in kgx.transformers.pandas_transformer)
parse() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
PATH
KGX-CLI-validate command line option
process_iri() (in module kgx.utils.rdf_utils)
Q
query() (kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
R
RdfGraphMixin (class in kgx.transformers.rdf_graph_mixin)
RdfOwlTransformer (class in kgx.transformers.rdf_transformer)
RdfTransformer (class in kgx.transformers.rdf_transformer)
RedSparqlTransformer (class in kgx.transformers.sparql_transformer)
remap_edge_property() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.nx_transformer.GraphMLTransformer method)
(kgx.transformers.nx_transformer.NetworkxTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
(kgx.transformers.transformer.Transformer method)
remap_node_identifier() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.nx_transformer.GraphMLTransformer method)
(kgx.transformers.nx_transformer.NetworkxTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
(kgx.transformers.transformer.Transformer method)
remap_node_property() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.nx_transformer.GraphMLTransformer method)
(kgx.transformers.nx_transformer.NetworkxTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
(kgx.transformers.transformer.Transformer method)
report() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.nx_transformer.GraphMLTransformer method)
(kgx.transformers.nx_transformer.NetworkxTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
(kgx.transformers.transformer.Transformer method)
restore() (kgx.transformers.json_transformer.JsonTransformer static method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer static method)
(kgx.transformers.neo_transformer.NeoTransformer static method)
(kgx.transformers.nx_transformer.GraphMLTransformer static method)
(kgx.transformers.nx_transformer.NetworkxTransformer static method)
(kgx.transformers.pandas_transformer.PandasTransformer static method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer static method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer static method)
(kgx.transformers.rdf_transformer.RdfTransformer static method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer static method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer static method)
(kgx.transformers.sparql_transformer.SparqlTransformer static method)
(kgx.transformers.transformer.Transformer static method)
restore_from_file() (kgx.transformers.json_transformer.JsonTransformer static method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer static method)
(kgx.transformers.neo_transformer.NeoTransformer static method)
(kgx.transformers.nx_transformer.GraphMLTransformer static method)
(kgx.transformers.nx_transformer.NetworkxTransformer static method)
(kgx.transformers.pandas_transformer.PandasTransformer static method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer static method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer static method)
(kgx.transformers.rdf_transformer.RdfTransformer static method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer static method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer static method)
(kgx.transformers.sparql_transformer.SparqlTransformer static method)
(kgx.transformers.transformer.Transformer static method)
S
save() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
save_attribute() (kgx.transformers.rdf_transformer.ObanRdfTransformer method)
save_edge() (kgx.transformers.neo_transformer.NeoTransformer method)
save_edge_unwind() (kgx.transformers.neo_transformer.NeoTransformer method)
save_node() (kgx.transformers.neo_transformer.NeoTransformer method)
save_node_unwind() (kgx.transformers.neo_transformer.NeoTransformer method)
save_with_unwind() (kgx.transformers.neo_transformer.NeoTransformer method)
sentencecase_to_snakecase() (in module kgx.utils.kgx_utils)
set_filter() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.nx_transformer.GraphMLTransformer method)
(kgx.transformers.nx_transformer.NetworkxTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
(kgx.transformers.transformer.Transformer method)
snakecase_to_sentencecase() (in module kgx.utils.kgx_utils)
SparqlTransformer (class in kgx.transformers.sparql_transformer)
T
Transformer (class in kgx.transformers.transformer)
U
update_categories() (kgx.operations.clique_merge.CliqueMerge method)
uriref() (kgx.transformers.rdf_transformer.ObanRdfTransformer method)
V
validate_categories() (kgx.operations.clique_merge.CliqueMerge method)
validate_edge() (kgx.transformers.json_transformer.JsonTransformer static method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer static method)
(kgx.transformers.neo_transformer.NeoTransformer static method)
(kgx.transformers.nx_transformer.GraphMLTransformer static method)
(kgx.transformers.nx_transformer.NetworkxTransformer static method)
(kgx.transformers.pandas_transformer.PandasTransformer static method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer static method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer static method)
(kgx.transformers.rdf_transformer.RdfTransformer static method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer static method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer static method)
(kgx.transformers.sparql_transformer.SparqlTransformer static method)
(kgx.transformers.transformer.Transformer static method)
validate_node() (kgx.transformers.json_transformer.JsonTransformer static method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer static method)
(kgx.transformers.neo_transformer.NeoTransformer static method)
(kgx.transformers.nx_transformer.GraphMLTransformer static method)
(kgx.transformers.nx_transformer.NetworkxTransformer static method)
(kgx.transformers.pandas_transformer.PandasTransformer static method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer static method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer static method)
(kgx.transformers.rdf_transformer.RdfTransformer static method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer static method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer static method)
(kgx.transformers.sparql_transformer.SparqlTransformer static method)
(kgx.transformers.transformer.Transformer static method)
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